List of Publications

• The application of the open pharmacological concepts triple store (Open PHACTS) to support drug discovery research (, )

• Identifying sigma factors in Mycobacterium smegmatis by comparative genomic analysis (, )

• The public road to high-quality curated biological pathways (, )

• Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes (, )

• Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes (, )

• Wikidata: A platform for data integration and dissemination for the life sciences and beyond (, )

• Scientific Lenses to Support Multiple Views over Linked Chemistry Data (, )

• Wikidata as a semantic framework for the Gene Wiki initiative (, )

• WikiPathways: capturing the full diversity of pathway knowledge (, )

• Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources (, )

• The ChEMBL database as linked open data (, )

• Applying linked data approaches to pharmacology: Architectural decisions and implementation (, )

• Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism (, )

• The FAIR Guiding Principles for scientific data management and stewardship (, )

• Nature Europe site should highlight most productive countries. (, )

• Opportunities and challenges presented by Wikidata in the context of biocuration (, )

• WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata (, )

• WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata (, )

• The role of bioinformatics in pathway curation (, )

• The distinction between linguistic and conceptual semantics in medical terminology and its implication for NLP-based knowledge acquisition. (, )

• WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research (, )

• Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation (, )

• Measuring impact in online resources with the CInumber (the CitedIn Number for online impact) (, )

• Acknowledging contributions to online expert assistance (, )

• Acknowledging contributions to online expert assistance (, )

• Exposing WikiPathways as Linked Open Data (, )

• Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform (, )

• Wikidata as an intuitive resource towards semantic data modeling in data FAIRification (, )

• Addendum: The FAIR Guiding Principles for scientific data management and stewardship (, )

• Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation (, )

• Wikidata as a linked-data hub for Biodiversity data (, )

• FAIR Principles: Interpretations and Implementation Considerations (, )

• Wikidata as a knowledge graph for the life sciences (, )

• WikiPathways: connecting communities (, )

• A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses (, )

• Knowledge graphs and wikidata subsetting (, )

• Participative Decision Making and the Sharing of Benefits: Laws, ethics, and data protection for building extended global communities (, )

• Complex Portal 2022: new curation frontiers (, )

• Ten simple rules for creating reusable pathway models for computational analysis and visualization (, )

• Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions (, )

• Using Crowd-sourcing Platforms to Increase and Spread Knowledge on the Biodiversity in Sub-Saharan Africa (, )

• Fairmetrics/Metrics: Proposed Fair Metrics And Results Of The Metrics Evaluation Questionnaire (, )