List of Publications#
The application of the open pharmacological concepts triple store (Open PHACTS) to support drug discovery research (
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Identifying sigma factors in Mycobacterium smegmatis by comparative genomic analysis (
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The public road to high-quality curated biological pathways (
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Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes (
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Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes (
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Wikidata: A platform for data integration and dissemination for the life sciences and beyond (
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Scientific Lenses to Support Multiple Views over Linked Chemistry Data (
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Wikidata as a semantic framework for the Gene Wiki initiative (
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WikiPathways: capturing the full diversity of pathway knowledge (
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Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources (
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Applying linked data approaches to pharmacology: Architectural decisions and implementation (
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Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism (
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The FAIR Guiding Principles for scientific data management and stewardship (
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Nature Europe site should highlight most productive countries. (
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Opportunities and challenges presented by Wikidata in the context of biocuration (
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WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata (
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WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata (
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The distinction between linguistic and conceptual semantics in medical terminology and its implication for NLP-based knowledge acquisition. (
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WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research (
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Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation (
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Measuring impact in online resources with the CInumber (the CitedIn Number for online impact) (
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Acknowledging contributions to online expert assistance (
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Acknowledging contributions to online expert assistance (
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Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform (
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Wikidata as an intuitive resource towards semantic data modeling in data FAIRification (
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Addendum: The FAIR Guiding Principles for scientific data management and stewardship (
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Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation (
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FAIR Principles: Interpretations and Implementation Considerations (
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A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses (
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Participative Decision Making and the Sharing of Benefits: Laws, ethics, and data protection for building extended global communities (
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Ten simple rules for creating reusable pathway models for computational analysis and visualization (
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Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions (
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Using Crowd-sourcing Platforms to Increase and Spread Knowledge on the Biodiversity in Sub-Saharan Africa (
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Fairmetrics/Metrics: Proposed Fair Metrics And Results Of The Metrics Evaluation Questionnaire (
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